Collaboration diagram for SprCwrErr:

Data Fields
SprCwrCESeq	ref
	reference sequence More...

SprCwrCESeq	cmp
	sequence to compare More...

double	cost
	Result: total cost (minimized) More...

unsigned int	Nsub
	Result: number of substitutions (2nd criterium to minimize) More...

unsigned int	Nins
	Result: number of insertions. More...

unsigned int	Ndel
	Result: number of deletions. More...

void(*	free_func )(void *info)

_FuncPtr1_CWR_ERR_	cmp_func

void *	cmp_data

SprCwrCESeq	diff

SprCwrCountTree *	conf_tree
	confusion "matrix" More...

Field Documentation

SprCwrCESeq SprCwrErr::ref

reference sequence

SprCwrCESeq SprCwrErr::cmp

sequence to compare

double SprCwrErr::cost

Result: total cost (minimized)

unsigned int SprCwrErr::Nsub

Result: number of substitutions (2nd criterium to minimize)

unsigned int SprCwrErr::Nins

Result: number of insertions.

unsigned int SprCwrErr::Ndel

Result: number of deletions.

void(* SprCwrErr::free_func)(void *info)

_FuncPtr1_CWR_ERR_ SprCwrErr::cmp_func

void* SprCwrErr::cmp_data

compare function + aux. data (e.g. distance matrix) + function to free the data

SprCwrCESeq SprCwrErr::diff

record the actions needed to convert the cmp sequence to the ref sequence

SprCwrCountTree* SprCwrErr::conf_tree

confusion "matrix"

Data Fields